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2017

  • Morrien E, Hannula SE, Snoek LB, Helmsing NR, Zweers H, de Hollander M, Soto RL, Bouffaud ML, Buee M, Dimmers W, Duyts H, Geisen S, Girlanda M, Griffiths RI, Jorgensen HB, Jensen J, Plassart P, Redecker D, Schmelz RM, Schmidt O, Thomson BC, Tisserant E, Uroz S, Winding A, Bailey MJ, Bonkowski M, Faber JH, Martin F, Lemanceau P, de Boer W, van Veen JA, van der Putten WH (2017) Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications 8:14349. 
  • Geisen S, Mitchell EAD, Wilkinson DM, Adl S, Bonkowski M, Brown MW, Fiore-Donno AM, Heger TJ, Jassey VEJ, Krashevska V, Lahr DJG, Marcisz K, Mulot M, Payne R, Singer D, Anderson OR, Charman DJ, Ekelund F, Griffiths BS, Rønn R, Smirnov A, Bass D, Belbahri L, Berney C, Blandenier Q, Chatzinotas A, Clarholm M, Dunthorn M, Feest A, Fernández LD, Foissner W, Fournier B, Gentekaki E, Hájek M, Helder J, Jousset A, Koller R, Kumar S, La Terza A, Lamentowicz M, Mazei Y, Santos SS, Seppey CVW, Spiegel FW, Walochnik J, Winding A, Lara E (2017) Soil protistology rebooted: 30 fundamental questions to start with. Soil Biology and Biochemistry 111:94-103. 
  • Van Hoesel W, Tiefenbacher A, König N, Dorn VM, Hagenguth JF, Prah U, Widhalm T, Wiklicky V, Koller R, Bonkowski M, Lagerlöf J, Ratzenböck A, Zaller JG (2017) Single and combined effects of pesticide seed dressings and herbicides on earthworms, soil microorganisms, and litter decomposition. Frontiers in Plant Science 8:215. 
  • Tice AK, Shadwick LL, Fiore-Donno AM, Geisen S, Kang S, Schuler GA, Spiegel FW, Wilkinson KA, Bonkowski M, Dumack K, Lahr DJG, Voelcker E, Clauß S, Zhang J, Brown MW (2016) Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group. Biology Direct 11 (1):69. 
  • Seppey, C.V.W., Singer, D., Dumack, K., Fournier, B., Belbahri, L., Mitchell, E.A.D., Lara, E., 2017. Distribution patterns of soil microbial eukaryotes suggests widespread algivory by phagotrophic protists as an alternative pathway for nutrient cycling. Soil Biology and Biochemistry 112, 68-76. 
  • Bernardes M, Pham C, Nguyen T, Le M, Bonkowski M, Ziegler T (2017) Comparative morphometrics and ecology of a newly detected population of Tylototriton vietnamensis from northeastern Vietnam including remarks on species conservation. Salamandra (In press). 
  • Bernardes M, Rauhaus A, Michel C, Pham C, Nguyen TQ, Le M, Pasmans F, Bonkowski M, Ziegler T (2017) Larval development and breeding ecology of Ziegler’s Crocodile Newt, Tylototriton ziegleri Nishikawa, Matsui and Nguyen, 2013 (Caudata: Salamandridae), compared to other Tylototriton representatives. Amphibian & Reptile Conservation 11 (1):72-87. 
  • Shang Y, Sikorski J, Bonkowski M, Fiore-Donno AM, Kandeler E, Marhan S, Boeddinghaus R, Solly EF, Schrumpf M, Schöning I, Wubet T, Buscot F, Overmann J (2016) Inferring interactions in complex microbial communities fro van Schingen M, Pham CT, Thi HA, Nguyen TQ, Bonkowski M Ziegler T (2016) Microhabitat characterization and habitat use of the Crocodile Lizard Shinisaurus crocodilurus Ahl, 1930 in Vietnam (submitted)m nucleotide sequence data and environmental parameters. PLOS ONE 12 (3):e0173765 
  • Egert J,Luu VQ, Nguyen TQ, Le MD, Bonkowski M, Ziegler T (2017) First record of Gracixalus quyeti (Amphibia: Anura: Rhacophoridae) from Laos: molecular consistency versus morphological divergence between populations on both sides of the Annamite Range. Revue suisse de Zoologie 124: 47-51. 
  • Luu VQ, Nguyev TQ, Le MD, Bonkowski M, Ziegler T (2017) A new karst dwelling species of the Gekko japonicus group (Squamata: Gekkonidae) from central Laos. Zootaxa 4263 (1):179-193. 
  • Dumack K, Schuster J, Bonkowski M (2017) A novel lineage of bacteriovorous filosean amoebae; Kraken gen. nov. (Cercozoa: Filosa) that is able to disassemble its own cell body. Insight into its morphology, phylogeny and ecology. Protist (early online) 
  • Dumack K, Mylnikov AP, Bonkowski M (2017) Evolutionary relationship of the scale-bearing Kraken (incertae sedis, Monadofilosa, Cercozoa, Rhizaria): Combining ultrastructure data and a two-gene phylogeny. Protist (early online). 
  • Dumack K, Mausbach P, Hegmann M, Bonkowski M (2017) Polyphyly in the thecate amoeba genus Lecythium (Chlamydophryidae, Tectofilosida, Cercozoa), Redescription of its type species L. hyalinum, description of L. jennyae sp. nov. and the establishment of Fisculla gen. nov. and Fiscullidae fam. nov. Protist 168 (3):294-310. 
  • Dumack K, Öztoprak H, Rüger L, Bonkowski M (2017) Shedding light on the polyphyletic thecate amoeba genus Plagiophrys: Transition of some of its species to Rhizaspis (Tectofilosida, Thecofilosea, Cercozoa) and the establishment of Sacciforma gen. nov. and Rhogostomidae fam. nov. (Cryomonadida, Thecofilosea, Cercozoa). Protist 168: 92-108. 
  • Smirnov A, Nassonova E, Geisen S, Bonkowski M, Kudryavtsev A, Berney C, Glotova A, Bondarenko N, Dykova I, Mrva M, Fahrni J, Pawlowski J (2017) Phylogeny and systematics of leptomyxid amoebae (Amoebozoa, Tubulinea, Leptomyxida). Protist 168: 220-252 

2016

  • Trap J, Bonkowski M, Plassard C, Villenave C, Blanchart E (2016) Marschner Review: Ecological importance of soil bacterivores on ecosystem functions. Plant and Soil 398, 1-24.
  • Andriuzzi, W.S., Ngo, P.-T., Geisen, S., Keith, A.M., Dumack, K., Bolger, T., Bonkowski, M., Brussaard, L., Faber, J.H., Chabbi, A., Rumpel, C., Schmidt, O. (2016) Organic matter composition and the protist and nematode communities around anecic earthworm burrows. Biology and Fertility of Soils 52: 91-100.
  • Bohan, D.A., Landuyt, D., Ma, A., Macfadyen, S., Martinet, V., Massol, F., McInerny, G., Montoya, J.M., Mulder, C., Pascual, U., Pocock, M.J., White, P., Blanchemanche, S., Bonkowski, M., Bretagnolle, V., Bronmark, C., Dicks, L., Dumbrell, A., Eisenhauer, N., Friberg, N., Gessner, M.O., Gill, R.J., Gray, C., Haughton, A., Ibanez, S., Jensen, J., Jeppesen, E., Jokela, J., Lacroix, G., Lannou, C., Lavorel, S., Le Galliard, J.F., Lescourret, F., Liu, S., Loeuille, N., McLaughlin, O., Muggleton, S., Penuelas, J., Petanidou, T., Petit, S., Pomati, F., Raffaelli, D., Rasmussen, J., Raybould, A., Reboud, X., Richard, G., Scherber, C., Scheu, S., Sutherland, W.J., Tamaddoni-Nezhad, A., ter Braak, C., Termansen, M., Thompson, M.S., Tscharntke, T., Vacher, C., van der Geest, H., Voigt, W., Vonk, J.A., Zhou, X., Woodward, G. (2016) Networking Our Way to Better Ecosystem Service Provision. Trends in Ecology & Evolution. 31: 112-121.
  • Kramer S, Dibbern D, Moll J, Huenninghaus M, Koller R, Krueger D, Marhan S, Urich T, Wubet T, Bonkowski M, Buscot F, Lueders T, Kandeler E (2016) Resource partitioning between bacteria, fungi, and protists in the detritusphere of an agricultural soil. Frontiers in Microbiology 7: 1524.
  • Ploch S, Rose L, Bass D, Bonkowski M (2016) High diversity revealed in leaf associated Protists (Rhizaria: Cercozoa) of Brassicaceae. Journal of Eukaryotic Microbiology 63: 635-641.
  • Fiore-Donno AM, Weinert J, Wubet T, Bonkowski M (2016) Metacommunity analysis of amoeboid protists in grassland soils. Scientific Reports 6: 19068.
  • Geisen S, Koller R, Hünninghaus M, Dumack K, Urich T, Bonkowski M (2016) The soil food web revisited: Diverse and widespread mycophagous soil protists. Soil Biology and Biochemistry 94:10-18..
  • Dumack K, Koller R, Weber B, Bonkowski M (2016) Estimated heterotrophic protist abundances and their diversity in South African biological soil crusts. South African Journal of Science 112: 1-5.
  • Dumack K, Müller M, Bonkowski M (2016) Description of Lecythium terrestris sp. nov. (Chlamydophryidae, Cercozoa), a soil dwelling protist feeding on fungi and algae. Protist 167: 93-105.
  • Dumack K, Schuster J, Bass D, Bonkowski M (2016) A novel lineage of ‘naked filose amoebae’; Kraken carinae gen. nov. sp. nov. (Cercozoa) with a remarkable locomotion by disassembly of its cell body. Protist 167: 268-278
  • Dumack K, Baumann C, Bonkowski M (2016) A bowl with marbles: Revision of the thecate amoeba genus Lecythium (Chlamydophryidae, Tectofilosida, Cercozoa, Rhizaria) including a description of four new species and an identification key. Protist 167: 440-459.
  • Kretzschmar M, Kuhnt A, Bonkowski M, Fiore-Donno AM (2016) Phylogeny of the Highly Divergent Echinosteliales (Amoebozoa) Journal of Eukaryotic Microbiology 63: 453-459.
  • Nguyen T A D, Abolafia J, Bonkowski M, Peña-Santiago R, Álvarez-Ortega S (2016) Two atypical new species of the genus Sectonema Thorne, 1930 (Nematoda, Dorylaimida, Aporcelaimidae) from Vietnam. European Journal of Taxonomy 171:1-20.
  • Nguyen T A D, Bonkowski M, Peña-Santiago R, , Abolafia J (2016) Re-description of Cephalobus topali Andrássy, 1970 (Rhabditida, Cephalobidae) from Vietnam, and transfer to Acrobeloides (Cobb, 1924) Thorne, 1937. Zootaxa 4092: 593-600.
  • Álvarez-Ortega S, Nguyen TAD, Abolafia J, Vu TTT, Bonkowski M, Peña-Santiago R (2016) Three new species of the genus Sectonema Thorne, 1930 (Nematoda, Dorylaimida, Aporcelaimidae) from Vietnam. Nematology 18: 517-536.
  • Alvarez-Ortega S, Nguyen TAD, Abolafia J, Bonkowski M, Pena-Santiago R (2016) Sectonema caobangense sp. n. from Vietnam (Nematoda, Dorylaimida, Aporcelaimidae). Journal of Nematology 48 (2):95.
  • Nguyen TAD, Abolafia J, Bonkowski M, Peña-Santiago R (2016) A third new species of Aporcelinus Andrássy, 2009 (Dorylaimida, Aporcelaimidae) from Vietnam, with the first SEM study of a representative of the genus. Journal of Nematology 48: 104-108.
  • Nguyen TAD, Abolafia J, Bonkowski M, Peña-Santiago R (2016) Two new species of the genus Aporcelinus Andrássy, 2009 (Nematoda, Dorylaimida) from Vietnam. Zootaxa 4103: 550-560.
  • Pham CT, Nguyen TQ, Bonkowski M, Ziegler T (2016) A new species of Odorrana (Amphibia: Anura: Ranidae) from Vietnam. Zootaxa 4084: 421–435.
  • Stone R., Blomkvist P., Hendriksen N.B., Bonkowski M., Jørgensen H.B., Carvalho F., Dunbar M.B., Gardi C., Geisen S., Griffiths R., Hug A.S., Jensen J., Laudon H., Mendes S., Morais P.V., Orgiazzi A., Plassart P., Römbke J., Rutgers M., Schmelz R.M., Sousa J.P., Steenbergen E., Suhadolc M., Winding A., Zupan M., Lemanceau P., Creamer R.E. 2016. A method of establishing a transect for biodiversity and ecosystem function monitoring across Europe. Applied Soil Ecology 97:3-11.
  • Griffiths BS, Römbke J, Schmelz R, Scheffczyk A, Faber J, Bloem J, Pérès G, Cluzeau D, Chabbi A, Suhadolc M, Sousa P, Martins da SIlva P, Carvalho F, Mendes S, Morais P, Francisco R, Pereira C, Bonkowski M, Geisen S, Bardgett R, de Vries F, Bolger T, Dirilgen T, Schmidt O, Winding A, Hendriksen N, Johansen A, Philippot L, Plassart P, Bru D, Thompson B, Griffiths R, Keith A, Rutgers M, Mulder C, Hannula E, Creamer R, Stone D (2015) Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function. Ecological Indicators 69: 213-223.
  • ten Hagen L, Rodríguez A, Menke N, Göcking C, Bisping M, Frommolt K-H, Ziegler T, Bonkowski M, Vences M (2016) Vocalizations in juvenile anurans: common spadefoot toads (Pelobates fuscus) regularly emit calls before sexual maturity. Naturwissenschaften 103: 75.
  • Luu QV, Calame T, Nguyen QT, Le MD, Bonkowski M, Ziegler T (2016) Cyrtodactylus rufford, a new cave-dwelling bent-toed gecko (Squamata: Gekkonidae) from Khammouane Province, central Laos. Zootaxa 4067: 185-199.
  • Luu QV, Nguyen QT, Le MD, Bonkowski M, Ziegler T (2016) A new species of karst-dwelling bent-toed gecko (Squamata: Gekkonidae) from Khammouane Province, central Laos. Zootaxa 4079: 87–102.
  • Luu VQ, Bonkowski M,Nguyen TQ, Le MD, Schneider N, Ziegler T (2016) Evolution in karst massifs: Cryptic diversity among bent-toed geckos along the Truong Son Range with descriptions of three new species and one new country record from Laos. Zootaxa 4107 (2): 101–140.
  • van Schingen M, Ha QQ, Pham CT, Le TQ, Nguyen TQ, Bonkowski M, Ziegler T (2016) Discovery of a new crocodile lizard population in Vietnam: Population trends, future prognoses and identification of key habitats for conservation. Revue Suisse de Zoologie 123: 241-251.
  • Zaller JG, König N, Tiefenbacher A, Muraoka Y, Querner P, Ratzenböck A, Bonkowski M, Koller R (2016) Pesticide seed dressings can affect the activity of various soil organisms and reduce decomposition of plant material. BMC Ecology 16:37.
  • Imparato, V., Santos, S.S., Johansen, A., Geisen, S., Winding, A. (2016) Stimulation of bacteria and protists in rhizosphere of glyphosate-treated barley. Applied Soil Ecology 98: 47-55.